Kompetisi Divisi Utama Liga Indonesia 2008/2009
Klasemen Reguler Wilayah Timur
| Pos | Klub | Main | M | S | K | GM | GK | Nilai |
| 1. | Perseman Manokwari | 6 | 4 | 1 | 1 | 15 | 6 | 13 |
| 2. | Persebaya Surabaya | 6 | 4 | 1 | 1 | 15 | 6 | 13 |
| 3. | PSIR Rembang | 5 | 3 | 2 | 0 | 6 | 3 | 11 |
| 4. | Persiba Bantul | 4 | 3 | 1 | 0 | 5 | 1 | 10 |
| 5. | Persiku Kudus | 5 | 2 | 3 | 0 | 5 | 2 | 9 |
| 6. | Persema Malang | 6 | 3 | 0 | 3 | 9 | 12 | 9 |
| 7. | PSS Sleman | 4 | 1 | 3 | 0 | 4 | 2 | 6 |
| 8. | Persibom Bolaang Mongondow | 3 | 2 | 0 | 1 | 3 | 2 | 6 |
| 9. | Persibo Bojonegoro | 6 | 1 | 3 | 2 | 5 | 7 | 6 |
| 10. | PSIM Jogjakarta | 4 | 1 | 1 | 2 | 3 | 4 | 4 |
| 11. | Persigo Gorontalo | 3 | 1 | 0 | 2 | 3 | 4 | 3 |
| 12. | Gresik United | 6 | 1 | 0 | 5 | 4 | 9 | 3 |
| 13. | Persekabpas Pasuruan | 6 | 0 | 1 | 5 | 0 | 10 | 1 |
| 14. | Persis Solo | 4 | 0 | 0 | 4 | 2 | 7 | 0 |
